Environmental associations of Pacific bluefin tuna (Thunnus orientalis) catch in the California Current system

We investigate the impact of oceanographic variability on Pacific bluefin tuna (Thunnus orientalis: PBF) distributions in the California Current system using remotely sensed environmental data, and fishery‐dependent data from multiple fisheries in a habitat‐modeling framework. We examined the effects of local oceanic conditions (sea surface temperature, surface chlorophyll, sea surface height, eddy kinetic energy), as well as large‐scale oceanographic phenomena, such as El Niño, on PBF availability to commercial and recreational fishing fleets. Results from generalized additive models showed that warmer temperatures of around 17–21°C with low surface chlorophyll concentrations (<0.5 mg/m³) increased probability of occurrence of PBF in the Commercial Passenger Fishing Vessel and purse seine fisheries. These associations were particularly evident during a recent marine heatwave (the “Blob”). In contrast, PBF were most likely to be encountered on drift gillnet gear in somewhat cooler waters (13–18°C), with moderate chlorophyll concentrations (0.5–1.0 mg/m³). This discrepancy was likely a result of differing spatiotemporal distribution of fishing effort among fleets, as well as the different vertical depths fished by each gear, demonstrating the importance of understanding selectivity when building correlative habitat models. In the future, monitoring and understanding environmentally driven changes in the availability of PBF to commercial and recreational fisheries can contribute to the implementation of ecosystem approaches to fishery management.     

Screening Wheat (Triticum spp.) Genotypes for Root Length under Contrasting Water Regimes: Potential Sources of Variability for Drought Resistance Breeding

Screening for root traits has been one of the most difficult areas to practise over large number of genotypes. Hydroponic systems enable easy access to roots while high‐molecular weight polyethylene glycol (PEG) is used to induce water stress. A total of 838 genotypes were evaluated for root length in a hydroponic trial under PEG‐induced stress and non‐stress growing conditions. Augmented complete block design with seven blocks and six standard control varieties was used. Root length differences were highly significant (P < 0.01) under both stress and non‐stress growing conditions among genotypes. Osmotic stress has caused an average reduction of 54 % in root length. Among the genotypes, root length ranged from 1.4 to 13.3 cm under stress, and 4.4 to 23.3 cm under non‐stress conditions, respectively. The best control variety for drought resistance was significantly (P < 0.05) outperformed by four new entries namely Colotana 296‐52, Compare, Santa Elena and Tammarin Rock, while the shortest roots were measured on genotypes Aus 16356, Elia, Camm, Portugal 3, and Sentinel. Differences among ploidy levels, domesticated and wild forms were also significant (P < 0.05). Hexaploid wheat showed significantly longer roots in both growing conditions while wild tetraploids showed the shortest roots under stress. There was a change in the ranking of genotypes under the two water regimes, which indicates the difficulty of selecting drought resistant varieties under optimum environments.     

The need for clear and comparable terminology in benthic ecology. Part II. Application of the European Directives

• 1. Problems with the classification system for marine ‘habitats’ are highlighted, which, ideally, should combine both comprehensibility and scientific rigour, being neither too simplistic nor so complicated that the system is accessible to only a few experts.
• 2. The European Union's Habitats Directive has created multiple difficulties owing to the varied interpretations of the different European Community members trying to apply it. The problem is even more complex in the marine domain, where the difficulty of application has been greatly underestimated.
• 3. Several areas for future applied research in the field of benthic ecology are proposed.

Copyright © 2007 John Wiley & Sons, Ltd.     

The role of biochar in retaining nutrients in amended tropical soils

This study investigated the effect of biochar amendments on the retention and availability of plant nutrients and Al in seven acidic tropical soils from Zambia and Indonesia. The experiments carried out investigated whether the adsorption capacity of NH$ _4^+ $ in the soils increased upon the addition of biochar and which effect biochar had on available concentrations of NO$ _3^- $ , K⁺, Mn²⁺, Mg²⁺ , PO$ _4^{3‐} $ , and Al³⁺. These nutrients were selected as they represent those important to plant growth and soil quality. No significant increases or decreases in aqueous NH$ _4^+ $ ‐N concentration with additions of biochar were detected. The Gaines–Thomas model was used in order to calculate selectivity coefficients for NH$ _4^+ $ exchange (K_gt values). Following the addition of biochar to soil, K_gt values decreased showing a reduction in the selective binding of NH$ _4^+ $ in the biochar amended soil compared to the control. The concentration of NO$ _3^- $ increased following the addition of biochar to the soils. The addition of 5 and 10% biochar to the Indonesian soil did not significantly alter (t‐test confidence level 0.05) the sorption of PO$ _4^{3‐} $ to the soil–biochar mixtures as compared to the soil alone. However, the addition of biochar to the soil from Zambia increased the sorption of PO$ _4^{3‐} $ compared to the soil alone. The concentrations of K⁺ and Mg²⁺ were significantly increased for almost all soils (t‐test at the 0.05 confidence level) following the addition of biochar. Addition of biochar to all but two soils significantly decreased (t‐test confidence level 0.05) Mn²⁺ concentrations. The concentration of Al³⁺ in the soils decreased exponentially significantly (t‐test confidence level 0.05) following the amendment of biochar in accordance with the increase in pH observed when biochar was added to the soil. These results show that biochar has the ability to release essential plant growth nutrients as well as alleviate Al toxicity in these soils.     

Fate of Chlorinated Benzenes in Laboratory Peat and Pozzolana Filters

The removal of chlorinated benzenes (CBs) from the compartments and from polluted industrial sites is of great public interest for the decontamination of polluted water and for the protection of the environment. Biological degradation could be considered as a feasible process to eliminate these compounds from the environment as soil or groundwater. A research program in progress since the year 2007 was initiated to investigate the capacity of eco-remediation of CB-contaminated groundwater using a pilot-scale subsurface flow constructed wetland. In order to assess the removal efficiency of these compounds and to evaluate the biological activities, column experiments were performed. The fate of three CBs was investigated by feeding spiked tap water through laboratory columns filled with two different solid-state materials: peat and pozzolana. In order to stimulate biological activity, organic matter coming from aged vertical flow constructed wetland was added to the media. Concentrations of CBs in water effluent and in air and biological activities were monitored during 4 months. At the end of the experimental period, CB concentrations in the depth of columns were determined and a mass balance was calculated for the CBs. Removal efficiencies of the laboratory columns were >98% in the peat columns and situated around 87% to 95% in the pozzolana columns, indicating the suitability of the experimental systems for the removal of CBs. Higher effluent CB concentrations from the pozzolana columns were detected. Concentration of CBs in ambient air indicates that volatilization was low. ATP monitoring, reduction of tetrazolium violet, and exopolysaccharide determination indicated considerable biological activity with variations according to column depth and carrier material.     

Effect of storage conditions on the biological activity of phenolic compounds of blueberry extract packed in glass bottles

Recent research suggests that blueberries are rich in total polyphenols and total anthocyanins. Phenolic compounds are highly unstable and may be lost during processing, particularly when heat treatment is involved. There is no systematic study available providing information on the fate of phenolic compounds during storage and how that affects their biological activity. We provide a systematic evaluation of the changes observed in total polyphenols (TPP), total anthocyanins (TACY), Trolox equivalent antioxidant capacity (TEAC), phenolic acids, and individual anthocyanins of blueberry extract stored in glass bottles and the ability of blueberry extract to inhibit cell proliferation. The extract was stored at different temperatures (-20 +/- 1, 6 +/- 1, 23 +/- 1, and 35 +/- 1 degrees C). Two cultivars, Tifblue and Powderblue, were chosen for the study. The recoveries of TPP, TACY, and TEAC in blueberry extract after pressing and heating were approximately 25, approximately 29, and approximately 69%, respectively, for both cultivars. The recovery of gallic acid, catechin, and quercetin was approximately 25%. Ferulic acid was not detected in the final extract in both Tifblue and Powderblue cultivars. The recovery of peonidin, malvidin, and cyanidin glycosides was approximately 20% in the final extract in both cultivars. Losses due to storage were less when compared with initial losses due to processing. At -20 degrees C, no statistically significant loss of TPP, TACY, and TEAC was observed up to 30 days (P < 0.05). At 6 degrees C storage, there was a significant loss observed from 15 to 30 days. Similar results were obtained at 23 and 35 degrees C (P < 0.05). There was retention of more than 40% of ellagic and quercetin after 60 days at 35 +/- 1 degrees C. Anthocyanins were not detected after 60 days of storage at 35 +/- 1 degrees C. Significant retention (P < 0.05) was obtained for malvidin (42.8 and 25.8%) and peonidin (74.0 and 79.5%) after 60 days of storage at 23 +/- 1 degrees C in glass bottles for Tifblue and Powderblue, respectively, when compared with other individual anthocyanins. A linear relationship was observed between TEAC values and total polyphenols or total anthocyanins. A cell viability assay was performed using HT-29 cancer cell lines and anthocyanins extracted from 30, 60, and 90 days of stored extract at 6 +/- 1 and 23 +/- 1 degrees C. A significant cell proliferation inhibition percentage was observed in 30 days, although this was reduced significantly after 30-90 days. These results suggest that heating and storage conditions significantly affect the phenolic compounds and their biological activities. Frozen and low temperature storage are suggested for blueberry extract in order to retain the bioactive components.     

Automated observation and analysis of earthworm surface behaviour under experimental habitat quality and availability conditions

Currently, the driving factors of active earthworm dispersal across the soil surface are not sufficiently understood, and distances traversed by individual earthworms have rarely been quantified. Research progress has been hampered by the lack of adequate observation methods as well as fast, objective and quantitative measurements of nocturnal earthworm behaviour.In this work, we report on the potential of a new, automated method using infrared-sensitive webcams and computer image analysis. Nightly surface activities of Lumbricus terrestris L. were monitored quantitatively while manipulating levels of disturbance, burrow availability and congener presence in standard observation units.The automated observation system proved to be simple and inexpensive to build, provided reliable quantitative measures of locomotive behaviour without animal disturbance, and considerably reduced human workload and bias.Waterlogging of the burrow zone stimulated surface activities around and away from the home burrow as compared to habitat disturbance by pesticide application and vibration. However, dispersing earthworms never settled in prefabricated burrows. Surface activity of individuals subjected to waterlogged conditions was influenced by the availability of alternative habitat. Minimal habitat disturbance (vibration) and the presence of conspecific individuals resulted in an increased amount of burrow-anchored, possibly sexually oriented, behaviour, but reciprocal burrow visits and mating were not observed. Pesticide application did not result in dispersal, increased foraging activities or sexual attraction attempts during this short-term study.The presence, extent and mechanisms of the remote assessment of important cues in the surroundings of the home burrow by L. terrestris need further research. Infrared monitoring opens new research avenues of earthworm surface behaviour studies (e.g. density-dependent dispersal, habitat selection, (re)colonization, invasion).